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Release news

The update and bug fix news of MagicViewer.
 Versoin 1.2.0 (Mar. 31, 2010)
 bugs fixed: genotype region format validation error.
 bugs fixed: loading annotation file with few lines.
 new feature: surport GBK format.
 new feature: display sequencing depth by pie height.
 new feature: statistic SNP type.
 new feature: user-defined adjust window size.
 new feature: user-defined view window size.
 modify SNP annotaion module increase speed and accuracy.
 Versoin 1.1.9 (Mar. 4, 2010)
 bugs fixed: next page button can't work very well.
 new feature: add two button for navigation.
 new feature: add a triangle at the end of a read to indicate strand and mapping quality.
 new feature: user-defined mismatch base color.
 refine code to for efficiency.
 Versoin 1.1.8 (Feb. 28, 2010)
 bugs fixed: update the URLs of GATK.
 Versoin 1.1.7 (Feb. 17, 2010)
 bugs fixed: doesn't out put all fields in SNP annotation step.
 Versoin 1.1.6 (Feb. 7, 2010)
 bugs fixed: when contains indel, alignment window display selected column wrongly.
 bugs fixed: annotation background color setting can't work properly.
 bugs fixed: "Variation Annotation" can't out put whole selected field.
 Versoin 1.1.5 (Feb. 1, 2010)
 new feature: support annotation list and simple search.
 new feature: support linux 32.
 new feature: refine the display of alignment navigator which can vividly show the alignment coordinate in the genome.
 bugs fixed: bypass the know bug of samtools fasta file index.
 Versoin 1.1.4 (Jan. 22, 2009)
 new feature: support display heterozygosis and homozygosis information.
 new feature: support mouse click navigation.
 Versoin 1.1.3 (Jan. 16, 2009)
 new feature: add two new buttons: next page and previous page for easy navigation.
 bugs fixed: MagicViewer doesn't work in some operation system with special java version.
 Versoin 1.1.2 (Jan. 9, 2009)
 new feature: refine the dispaly of annotation window's axis.
 new feature: display special SNP type by special color .
 new feature: replace some auto load moudle by manual to increase annotation loading efficiency.
 bugs fixed: tag doesn't change with the order of annotaion track.
 bugs fixed: genotype doesn't work in some occasion.
 Versoin 1.1 (Jan. 3, 2009)
 new feature: add button3 menu for alignment window.
 bugs fixed: allows new view project without annotation file.
 Versoin 1.0 (Dec. 24, 2009)
  new feature: supports primer design for the detected genetic varation.
 Some core codes of MagicViewer is revised to support more memory efficient to display large-scale short reads.
 Versoin 1.0Beta (Dec. 15, 2009)
 The GATK program is implememted to allow calling the genetic variation between shorts and reference genome.
The reference genome annotation in GFF format can be loaded to associate the genetic variation.
A versatile genetic variation annotation and visualization interface is provided to perform details of the query options, functional classifications, subset selection and sequence association of detected SNPs.
 Versoin 0.1 (Dec. 06, 2009)
 The short reads and sequencing depth color scheme is increasing enhanced.
 Versoin 0.1Beta (Dec. 02, 2009)
MagicViewer provides a user-friendly interface in which large-scale short reads and sequencing depth can be easily visualized in zoomable images.
 Suppotuser definable color scheme through an operating system-independent manner with the implement of Java language.
Copyright©2009, Institute of Genomic Medicine/Zhejiang Provincial Key Laboratory of Medical Genetics,
Wenzhou Medical College, Wenzhou 325035, China.