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MagicViewer is a visualization tool to display large-scale reads, which featured with operating system-independence, user-friendly interface, multiple navigation, zoom mode and custom color schemes. Meanwhile, it is a comprehensive programming framework designed to enable efficient and robust analysis and visualization of genetic variation for short reads generated by next-generation DNA sequencing projects.
 Load of project
 MagicViewer introduces a conspicuously new feature of workspace. MagicViewer can create new project, save the intermediate result as log file and easily load, browse, further update and export the results in PDF format for directly publication or presentation.
 Graphical interface
 MagicViewer provides extensive flexibility to change the look of the displayed short reads alignment and sequencing depth. It allows zoom in/out to view graphs of mapping results in any scale desired. Users can view SNP candidates conveniently along with the alignments between the reads and the reference sequence. When the mouse hovers on a specific reads, auxiliary information is shown in a tooltip.
 Customizable display
 MagicViewer permits changing font and colors in many different combinations, such as each base and background color.
 Genetic variation detection and annotation
 MagicViewer has been designed to serve as a comprehensive workflow system for genetic variation detection, filtration, annotation, primer design and visualization.
 Genetic variation visualization
 MagicViewer supports annotation information definable function. Users can choose optional fields required through custom setting to achieve intact annotations and desired display.
Copyright©2009, Institute of Genomic Medicine/Zhejiang Provincial Key Laboratory of Medical Genetics,
Wenzhou Medical College, Wenzhou 325035, China.